When you order primers, they are delivered as dried (lyophilized) DNA in an Eppendorf tube. You must then dilute these primers with molecular biology grade water to an appropriate concentration. Typically, the primer tube simply lists the mass of DNA that is in each tube. Based on this information, complete the following table to create 100 uM stock primers for the 6 primers
Primer |
Number of nucleotides |
Mass (ug) |
nMoles |
H20 needed to create 100 uM stock |
Polymerase Forward |
20 |
206 |
||
Polymerase reverse |
20 |
174 |
||
Sybr Forward |
20 |
167 |
||
Sybr Reverse |
20 |
231 |
||
TaqMan Forward |
20 |
100 |
||
TaqMan Reverse |
20 |
149 |
Answer- The nmol of DNA can be determined by the formula ugDNA× pmol/660pg × 10^6pg/pmol × 1/N and then total divided by 1000
N- number of nucleotides
660pg/pmol- average weight of nucleotide.
Primer | Nucleotide | ug | nmol |
Polymerase F | 20 | 206 | 15.60 |
Polymerase R | 20 | 174 | 13.18 |
Sybr F | 20 | 167 | 12.65 |
Sybr R | 20 | 231 | 17.50 |
Taqman F | 20 | 100 | 7.50 |
Taqman R | 20 | 149 | 11.28 |
The dilution is done by multiplying the nmol of DNA by 10 and adding that amount of water.
So the amount of water that will be add to different primers are respectively from upside to down - 156, 131, 126, 175, 75, 112 ul of labgrade water.
Get Answers For Free
Most questions answered within 1 hours.