Based on the nature of the side chain, where would you expect to find polar versus nonpolar amino acids?
Amino acids contain an alpha amino group, an alpha carboxyl
group, and a side chain.
Amino and carboxyl groups are involved in the peptide bond
formation.
Amino acids with polar side chains: Arg, Lys, Asp, and Glu
Amino acids with non-polar side chains: Val, Leu, and Ile
Cellular environment is hydrophilic (Water is the major
constituent of live cell -up to 80%-95%)
The hydrophilic environment can interact with hydrophilic groups.
It repels hydrophobic groups.
So, proteins fold in such a way that most of their charged/polar
amino acids are exposed to the external hydrophilic environment and
hydrophobic amino acids buried inside the core.
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